Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 53 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_13720: arginine decarboxylase
is similar to:
PaperBLAST

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

98% id,
100% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

87% id,
100% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

85% id,
100% cov

More...

AO353_23560: lysine decarboxylase
is similar to:
PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

41% id,
100% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

41% id,
99% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

25% id,
54% cov

More...

AO353_05445: ornithine decarboxylase
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

26% id,
84% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

28% id,
28% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

27% id,
27% cov

AO353_09035: diaminopimelate decarboxylase
is similar to:
PaperBLAST

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

24% id,
54% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

28% id,
43% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

24% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory