Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_13720: arginine decarboxylase is similar to:	PaperBLAST
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	98% id, 100% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	87% id, 100% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	85% id, 100% cov
Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus	47% id, 98% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	44% id, 94% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	44% id, 94% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	41% id, 100% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	40% id, 94% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	37% id, 98% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	38% id, 93% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	37% id, 91% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	34% id, 99% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	38% id, 86% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	38% id, 81% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	31% id, 99% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	36% id, 83% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	36% id, 83% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	42% id, 64% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	34% id, 68% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	42% id, 55% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	43% id, 53% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	40% id, 56% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	41% id, 54% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	39% id, 57% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	41% id, 52% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	40% id, 52% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	41% id, 50% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	41% id, 50% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	34% id, 59% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	40% id, 50% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	35% id, 37% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	42% id, 23% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	44% id, 22% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	44% id, 21% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	40% id, 24% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	44% id, 20% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	44% id, 20% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	32% id, 28% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	41% id, 21% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	42% id, 20% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	40% id, 19% cov
More...

AO353_23560: lysine decarboxylase is similar to:	PaperBLAST
ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli adiA / GI\|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	41% id, 100% cov
E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica	41% id, 99% cov
Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium	25% id, 54% cov
Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium	35% id, 21% cov
More...

AO353_05445: ornithine decarboxylase is similar to:	PaperBLAST
ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens	26% id, 84% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	28% id, 28% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	27% id, 27% cov

AO353_09035: diaminopimelate decarboxylase is similar to:	PaperBLAST
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	24% id, 54% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	28% id, 43% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	24% id, 51% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	24% id, 51% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	28% id, 42% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	25% id, 45% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	26% id, 41% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	27% id, 40% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	25% id, 39% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	26% id, 37% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	25% id, 36% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	24% id, 37% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory