Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 27 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_09035: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

67% id,
100% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

49% id,
99% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

42% id,
98% cov

More...

AO353_05445: ornithine decarboxylase
is similar to:
PaperBLAST

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

30% id,
91% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

30% id,
91% cov

DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii

30% id,
84% cov

More...

AO353_13720: arginine decarboxylase
is similar to:
PaperBLAST

DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii

24% id,
74% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

26% id,
64% cov

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

26% id,
61% cov

More...

AO353_02975: aspartate kinase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

25% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory