Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 7 curated entries in PaperBLAST's database that match '4.1.2.5' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_07670: threonine aldolase
is similar to:
PaperBLAST

AO353_07670: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

100% id,
100% cov

PfGW456L13_1114: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

95% id,
100% cov

Q88R13: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida

85% id,
100% cov

More...

AO353_02985: threonine aldolase
is similar to:
PaperBLAST

LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
itaE / GB|BAA20882.1: threonine aldolase; EC 4.1.2.5 from Escherichia coli

57% id,
99% cov

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

48% id,
98% cov

GLY1 / GB|AAA72430.1: threonine aldolase; EC 4.1.2.5 from Saccharomyces cerevisiae

40% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory