Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_00900: 2-methylisocitrate lyase is similar to:	PaperBLAST
Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens	97% id, 100% cov
prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator	81% id, 96% cov
PRPB_CUPNE / Q937P0: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Cupriavidus necator	80% id, 96% cov
RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis	80% id, 96% cov
PRPB_SALTY / Q56062: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Salmonella typhimurium prpB / Q56062: 2-methylisocitrate lyase subunit (EC 4.1.3.30) from Salmonella typhimurium	76% id, 99% cov
PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli	74% id, 98% cov
PRPB_SHEON / Q8EJW1: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Shewanella oneidensis	62% id, 99% cov
P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis	43% id, 96% cov
PRPB1_CORGL / Q8NSH8: Probable 2-methylisocitrate lyase 1; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum	42% id, 94% cov
PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum	41% id, 95% cov
Q2L8W6: Methylisocitrate lyase (EC 4.1.3.30) from Toxoplasma gondii	39% id, 79% cov
More...

AO353_27735: isocitrate lyase is similar to:	PaperBLAST
ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis	63% id, 97% cov
P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis	28% id, 91% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	38% id, 62% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	36% id, 56% cov
ACEB_YARLI / Q6BZP5: 2-methylisocitrate lyase, mitochondrial; EC 4.1.3.30 from Yarrowia lipolytica	32% id, 61% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	34% id, 57% cov
ACEB_HYPAI / G9NNY7: 2-methylisocitrate lyase, mitochondrial; EC 4.1.3.30 from Hypocrea atroviridis	39% id, 45% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	36% id, 48% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	36% id, 47% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans	35% id, 48% cov
GI\|61657961: methylisocitrate lyase precursor; EC 4.1.3.30 from Emericella nidulans mclA: methylisocitrate lyase; EC 4.1.3.30 from Emericella nidulans	39% id, 43% cov
ACEB_EMENI / C8V9Y5: Methylisocitrate lyase, mitochondrial; 2-methylisocitrate lyase, mitochondrial; EC 4.1.3.30 from Emericella nidulans	39% id, 43% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	33% id, 51% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae	35% id, 46% cov
PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli	30% id, 54% cov
PRPB1_CORGL / Q8NSH8: Probable 2-methylisocitrate lyase 1; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum	28% id, 58% cov
ACEB_YEAST / Q12031: Mitochondrial 2-methylisocitrate lyase ICL2; Methylisocitrate lyase; EC 4.1.3.30 from Saccharomyces cerevisiae	36% id, 43% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans	44% id, 32% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae	41% id, 33% cov
Q2L8W6: Methylisocitrate lyase (EC 4.1.3.30) from Toxoplasma gondii	38% id, 35% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	41% id, 31% cov
PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum	32% id, 40% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	38% id, 32% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis	36% id, 34% cov
ACEB_YEAST / Q12031: Mitochondrial 2-methylisocitrate lyase ICL2; Methylisocitrate lyase; EC 4.1.3.30 from Saccharomyces cerevisiae	39% id, 31% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	36% id, 32% cov
ACEB_HYPAI / G9NNY7: 2-methylisocitrate lyase, mitochondrial; EC 4.1.3.30 from Hypocrea atroviridis	35% id, 31% cov
ACEB_EMENI / C8V9Y5: Methylisocitrate lyase, mitochondrial; 2-methylisocitrate lyase, mitochondrial; EC 4.1.3.30 from Emericella nidulans	37% id, 29% cov
GI\|61657961: methylisocitrate lyase precursor; EC 4.1.3.30 from Emericella nidulans mclA: methylisocitrate lyase; EC 4.1.3.30 from Emericella nidulans	37% id, 29% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis	31% id, 34% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory