Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 6 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_23515: muconate cycloisomerase
is similar to:

YidU / b4478: D-galactonate dehydratase (EC; EC from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC from Escherichia coli

24% id,
91% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC; EC; EC from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC from Saccharolobus solfataricus

23% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory