Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 17 curated entries in PaperBLAST's database that match '4.2.1.19'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_12070: imidazoleglycerol-phosphate dehydratase
is similar to:
PaperBLAST

BPHYT_RS17700: imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) from Burkholderia phytofirmans

78% id,
99% cov

HIS7_CRYNJ / P0CO22: Imidazoleglycerol-phosphate dehydratase; IGPD; EC 4.2.1.19 from Cryptococcus neoformans

51% id,
99% cov

HIS7_MYCTU / P9WML9: Imidazoleglycerol-phosphate dehydratase; IGPD; EC 4.2.1.19 from Mycobacterium tuberculosis

42% id,
96% cov

More...

AO353_10590: histidinol phosphatase
is similar to:
PaperBLAST

HIS7_ECO57 / Q9S5G5: Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 from Escherichia coli

30% id,
38% cov

HisB / b2022: imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase (EC 4.2.1.19; EC 3.1.3.15) from Escherichia coli
hisB / P06987: imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase (EC 4.2.1.19; EC 3.1.3.15) from Escherichia coli

30% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2323253-2323897 (frame -2) on CP012830
is similar to:
PaperBLAST

HIS7_BACTN / Q8ABA7: Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 from Bacteroides thetaiotaomicron
Also see hits to annotated proteins above

28% id,
46% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory