Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 4 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_05290: galactarate dehydratase
is similar to:

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC from Escherichia coli

35% id,
99% cov

CA265_RS19875: Altronate dehydratase (EC from Pedobacter sp.

34% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory