Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)
Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).
These curated entries have 24 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query
AO353_23515: muconate cycloisomerase is similar to: | PaperBLAST |
MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp. | 29% id, 56% cov |
MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans | 25% id, 44% cov |
MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii | 30% id, 33% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
5338607-5339806 (frame -2) on CP012830 is similar to: | PaperBLAST |
MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp. | 28% id, 95% cov |
MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum | 28% id, 95% cov |
MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum | 28% id, 95% cov |
Lawrence Berkeley National Laboratory