Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_05290: galactarate dehydratase
is similar to:

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC; EC from Burkholderia phytofirmans

31% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5338607-5339806 (frame -2) on CP012830
is similar to:

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC from Polaromonas sp.

23% id,
77% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory