Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 82 curated entries in PaperBLAST's database that match '4.3.1.2'.

These curated entries have 69 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_12270: histidine ammonia-lyase
is similar to:
PaperBLAST

Q54JI7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Dictyostelium discoideum

40% id,
96% cov

TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides

37% id,
96% cov

TALY_CUPMC / Q1LRV9: Tyrosine ammonia-lyase; CmTAL; Tyrosine 2,3-aminomutase; EC 4.3.1.23; EC 5.4.3.6 from Cupriavidus metallidurans

36% id,
95% cov

More...

AO353_17725: histidine ammonia-lyase
is similar to:
PaperBLAST

TALY_CUPMC / Q1LRV9: Tyrosine ammonia-lyase; CmTAL; Tyrosine 2,3-aminomutase; EC 4.3.1.23; EC 5.4.3.6 from Cupriavidus metallidurans

37% id,
95% cov

TAM_MYXFU / B8ZV93: Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus

36% id,
97% cov

TAM_MYXSM / B8ZV94: Tyrosine 2,3-aminomutase; MxTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus sp.

36% id,
97% cov

More...

AO353_12660: histidine ammonia-lyase
is similar to:
PaperBLAST

TAM_STRGL / Q8GMG0: MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus

37% id,
95% cov

TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides

35% id,
96% cov

TAM_MYXFU / B8ZV93: Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus

36% id,
92% cov

More...

AO353_25185: ornithine cyclodeaminase
is similar to:
PaperBLAST

RAPL_STRRN / Q54304: L-lysine cyclodeaminase; Rapamycin biosynthesis protein L; EC 4.3.1.28 from Streptomyces rapamycinicus
rapL / Q54304: L-lysine cyclodeaminase (EC 4.3.1.28) from Streptomyces rapamycinicus

30% id,
97% cov

fkbL / Q9KIE2: L-lysine cyclodeaminase (EC 4.3.1.28) from Streptomyces hygroscopicus

32% id,
87% cov

AO353_24985: L-seryl-tRNA(Sec) selenium transferase
is similar to:
PaperBLAST

DGAE_SALT1 / D0ZLR3: D-glucosaminate-6-phosphate ammonia lyase; Glucosaminate-6-phosphate dehydratase; EC 4.3.1.29 from Salmonella typhimurium
dgaE / D0ZLR3: D-glucosaminate 6-phosphate ammonia-lyase (EC 4.3.1.29) from Salmonella typhimurium
D0ZLR3: D-glucosaminate-6-phosphate ammonia-lyase (EC 4.3.1.29) from Salmonella enterica

26% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

999686-1000687 (frame +2) on CP012830
is similar to:
PaperBLAST

fkbL / Q9KIE2: L-lysine cyclodeaminase (EC 4.3.1.28) from Streptomyces hygroscopicus
Also see hits to annotated proteins above

26% id,
74% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory