Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 38 curated entries in PaperBLAST's database that match '4.4.1.5' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_26955: lactoylglutathione lyase
is similar to:
PaperBLAST

Q88GF8: lactoylglutathione lyase (EC 4.4.1.5) from Pseudomonas putida

83% id,
99% cov

gloA / P16635: glyoxalase I monomer (EC 4.4.1.5) from Pseudomonas putida

81% id,
100% cov

Q9HU72: lactoylglutathione lyase (EC 4.4.1.5) from Pseudomonas aeruginosa

57% id,
91% cov

More...

AO353_17405: glutamine amidotransferase
is similar to:
PaperBLAST

DJ1D_ARATH / Q9M8R4: Protein DJ-1 homolog D; AtDJ1D; Lactoylglutathione lyase DJ1D; EC 4.4.1.5 from Arabidopsis thaliana

55% id,
50% cov

AO353_19575: dimethylglycine dehydrogenase
is similar to:
PaperBLAST

DJ1D_ARATH / Q9M8R4: Protein DJ-1 homolog D; AtDJ1D; Lactoylglutathione lyase DJ1D; EC 4.4.1.5 from Arabidopsis thaliana

34% id,
31% cov

AO353_24760: glutamine amidotransferase
is similar to:
PaperBLAST

DJ1D_ARATH / Q9M8R4: Protein DJ-1 homolog D; AtDJ1D; Lactoylglutathione lyase DJ1D; EC 4.4.1.5 from Arabidopsis thaliana

30% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3845567-3846367 (frame +2) on CP012830
is similar to:
PaperBLAST

DJ1D_ARATH / Q9M8R4: Protein DJ-1 homolog D; AtDJ1D; Lactoylglutathione lyase DJ1D; EC 4.4.1.5 from Arabidopsis thaliana
Also see hits to annotated proteins above

51% id,
49% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory