Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 4 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_00885: 3-methylitaconate isomerase
is similar to:

Q8EJW4: aconitate DELTA-isomerase (EC from Shewanella oneidensis

83% id,
98% cov

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC from Ustilago maydis

31% id,
81% cov

AO353_26715: molybdenum ABC transporter substrate-binding protein
is similar to:

AIS_PSESP / A0A0A1H8I4: Aconitate isomerase; AI; EC from Pseudomonas sp.
A0A0A1H8I4: aconitate DELTA-isomerase (EC from Pseudomonas sp.

48% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory