Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 86 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_02070: prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

87% id,
100% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

31% id,
97% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

30% id,
97% cov

More...

AO353_23985: isochorismate-pyruvate lyase
is similar to:
PaperBLAST

PCHB_PSEAE / Q51507: Isochorismate pyruvate lyase; IPL; Chorismate mutase; CM; Salicylate biosynthesis protein; EC 4.2.99.21; EC 5.4.99.5 from Pseudomonas aeruginosa

55% id,
96% cov

AO353_12165: chorismate mutase
is similar to:
PaperBLAST

B2JYH9: chorismate mutase (EC 5.4.99.5) from Paraburkholderia phymatum

47% id,
86% cov

Q2SY64: chorismate mutase (EC 5.4.99.5) from Burkholderia thailandensis

35% id,
94% cov

CHMU_PSEAE / Q9HU05: Monofunctional chorismate mutase; EC 5.4.99.5 from Pseudomonas aeruginosa

37% id,
84% cov

More...

AO353_00925: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

24% id,
96% cov

AO353_07230: anthranilate synthase
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

32% id,
59% cov

AO353_16555: 2-dehydro-3-deoxyphosphooctonate aldolase
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

27% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory