Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 14 curated entries in PaperBLAST's database that match '6.3.1.11'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_08595: gamma-glutamylputrescine synthetase
is similar to:
PaperBLAST

AO353_08595: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

100% id,
100% cov

PfGW456L13_925: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

100% id,
100% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

98% id,
100% cov

More...

AO353_29300: gamma-glutamylputrescine synthetase
is similar to:
PaperBLAST

PfGW456L13_925: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

95% id,
100% cov

AO353_08595: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

94% id,
100% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

93% id,
100% cov

More...

AO353_08590: glutamine synthetase
is similar to:
PaperBLAST

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

73% id,
100% cov

BPHYT_RS23160: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans

56% id,
100% cov

Pf6N2E2_4509: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

36% id,
100% cov

More...

AO353_24780: glutamine synthetase
is similar to:
PaperBLAST

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

71% id,
100% cov

BPHYT_RS23160: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans

55% id,
100% cov

Pf6N2E2_4509: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

34% id,
100% cov

More...

AO353_02900: glutamate--ammonia ligase
is similar to:
PaperBLAST

BPHYT_RS23160: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans

41% id,
96% cov

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

41% id,
96% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

31% id,
98% cov

More...

AO353_27475: glutamine synthetase
is similar to:
PaperBLAST

PUUA_ECOLI / P78061: Gamma-glutamylputrescine synthetase PuuA; Gamma-Glu-Put synthetase; Glutamate--putrescine ligase; EC 6.3.1.11 from Escherichia coli
YcjK / b1297: glutamate-putrescine ligase (EC 6.3.1.11) from Escherichia coli
puuA / P78061: glutamate-putrescine ligase (EC 6.3.1.11) from Escherichia coli

38% id,
95% cov

BWI76_RS10710: Glutamate--putrescine ligase (EC 6.3.1.11) from Klebsiella michiganensis

38% id,
94% cov

PS417_27140: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas simiae

36% id,
97% cov

More...

AO353_27900: glutamine synthetase
is similar to:
PaperBLAST

GLNA2_HALMT / I3R584: Gamma-glutamylputrescine synthetase; Gamma-Glu-Put synthetase; Glutamate--putrescine ligase; EC 6.3.1.11 from Haloferax mediterranei

32% id,
94% cov

BWI76_RS10710: Glutamate--putrescine ligase (EC 6.3.1.11) from Klebsiella michiganensis

29% id,
50% cov

PUUA_ECOLI / P78061: Gamma-glutamylputrescine synthetase PuuA; Gamma-Glu-Put synthetase; Glutamate--putrescine ligase; EC 6.3.1.11 from Escherichia coli
YcjK / b1297: glutamate-putrescine ligase (EC 6.3.1.11) from Escherichia coli
puuA / P78061: glutamate-putrescine ligase (EC 6.3.1.11) from Escherichia coli

29% id,
50% cov

More...

AO353_24910: glutamine synthetase
is similar to:
PaperBLAST

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

30% id,
96% cov

Psest_4288: Glutamate--putrescine ligase (EC 6.3.1.11) from Pseudomonas stutzeri

29% id,
94% cov

BWI76_RS10710: Glutamate--putrescine ligase (EC 6.3.1.11) from Klebsiella michiganensis

30% id,
90% cov

More...

AO353_12170: glutamine synthetase
is similar to:
PaperBLAST

PfGW456L13_925: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

28% id,
98% cov

PS417_27140: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas simiae

28% id,
98% cov

AO353_08595: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

28% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory