Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 3 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuD' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_20625: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

64% id,
98% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud) from methhanocaldococcus jannaschii dsm2661 (mj1271)

33% id,
68% cov

AO353_00565: aconitate hydratase
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud) from methhanocaldococcus jannaschii dsm2661 (mj1271)

29% id,
66% cov

AO353_00890: Fe/S-dependent 2-methylisocitrate dehydratase AcnD
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud) from methhanocaldococcus jannaschii dsm2661 (mj1271)

29% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory