Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 3 curated entries in PaperBLAST's database that match 'N-succinylcitrulline desuccinylase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_29125: acetylornithine deacetylase
is similar to:
PaperBLAST

CA265_RS18500: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Pedobacter sp.

28% id,
94% cov

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron

26% id,
93% cov

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

28% id,
75% cov

AO353_28235: acetylornithine deacetylase
is similar to:
PaperBLAST

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

26% id,
76% cov

AO353_08690: acetylornithine deacetylase
is similar to:
PaperBLAST

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

27% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory