Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 60 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 48 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_14020: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica

74% id,
100% cov

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
1dfoB / P0A825: Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate

73% id,
100% cov

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

65% id,
100% cov

More...

AO353_07665: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica

71% id,
100% cov

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
1dfoB / P0A825: Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate

71% id,
100% cov

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

62% id,
100% cov

More...

AO353_10495: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
1dfoB / P0A825: Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate

66% id,
100% cov

GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica

66% id,
100% cov

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

58% id,
100% cov

More...

AO353_29335: serine hydroxymethyltransferase
is similar to:
PaperBLAST

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

64% id,
98% cov

GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus

61% id,
98% cov

2dkjA / Q5SI56: Crystal structure of t.Th.Hb8 serine hydroxymethyltransferase

60% id,
98% cov

More...

AO353_10530: serine hydroxymethyltransferase
is similar to:
PaperBLAST

1kkjA / Q7SIB6: Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus

58% id,
99% cov

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

58% id,
97% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

57% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory