Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 1 curated entries in PaperBLAST's database that match 'cytochrome%deoxyribose dehydrogenase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_10800: alcohol dehydrogenase
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

51% id,
88% cov

AO353_27065: cytochrome C oxidase Cbb3
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

34% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory