Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 1 curated entries in PaperBLAST's database that match 'deoxy%ribose dehydrogenase%alpha' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_23430: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

54% id,
99% cov

AO353_01425: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

50% id,
94% cov

AO353_00730: FAD-binding molybdopterin dehydrogenase
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

33% id,
98% cov

AO353_27070: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

32% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory