Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 2 curated entries in PaperBLAST's database that match 'glycine decarboxylase H' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_08730: glycine cleavage system protein H
is similar to:
PaperBLAST

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

53% id,
78% cov

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

46% id,
73% cov

AO353_03495: glycine cleavage system protein H
is similar to:
PaperBLAST

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

40% id,
78% cov

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory