Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 23 curated entries in PaperBLAST's database that match '1.1.1.103' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_04765: lactaldehyde reductase
is similar to:
PaperBLAST

YiaY / b3589: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
yiaY / P37686: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli

69% id,
99% cov

AO356_14405: alcohol dehydrogenase
is similar to:
PaperBLAST

YiaY / b3589: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
yiaY / P37686: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli

38% id,
100% cov

AO356_28020: alcohol dehydrogenase
is similar to:
PaperBLAST

YiaY / b3589: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
yiaY / P37686: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli

38% id,
99% cov

AO356_28545: alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

36% id,
99% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

33% id,
99% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

34% id,
95% cov

More...

AO356_24895: butanediol dehydrogenase
is similar to:
PaperBLAST

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

33% id,
100% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

33% id,
100% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

32% id,
97% cov

More...

AO356_24200: dehydrogenase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

31% id,
98% cov

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

29% id,
98% cov

PGA1_c34320: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Phaeobacter inhibens

27% id,
99% cov

More...

AO356_05920: S-(hydroxymethyl)glutathione dehydrogenase
is similar to:
PaperBLAST

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

30% id,
99% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

30% id,
99% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

28% id,
98% cov

More...

AO356_29985: alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

30% id,
95% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

29% id,
87% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

27% id,
91% cov

AO356_14000: aldehyde dismutase
is similar to:
PaperBLAST

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

29% id,
92% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

27% id,
95% cov

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

27% id,
92% cov

More...

AO356_00820: alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

29% id,
90% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

30% id,
86% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

30% id,
86% cov

More...

AO356_12960: NADPH:quinone oxidoreductase
is similar to:
PaperBLAST

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

26% id,
99% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

25% id,
99% cov

AO356_29495: NADPH:quinone oxidoreductase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

32% id,
77% cov

AO356_26320: protein CapI
is similar to:
PaperBLAST

RR42_RS28300: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Cupriavidus basilensis

26% id,
74% cov

AO356_14875: NAD-dependent dehydratase
is similar to:
PaperBLAST

RR42_RS28300: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Cupriavidus basilensis

27% id,
73% cov

AO356_23065: NAD-dependent dehydratase
is similar to:
PaperBLAST

Q97BK3: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermoplasma volcanium

28% id,
55% cov

E3PS87: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Acetoanaerobium sticklandii

25% id,
53% cov

AO356_27475: shikimate dehydrogenase
is similar to:
PaperBLAST

PGA1_c34320: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Phaeobacter inhibens

29% id,
47% cov

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

36% id,
18% cov

AO356_29100: epimerase
is similar to:
PaperBLAST

Q7YW97: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Trypanosoma brucei

23% id,
49% cov

AO356_11305: quinone oxidoreductase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

38% id,
23% cov

AO356_27080: alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

38% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory