Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 24 curated entries in PaperBLAST's database that match '1.1.1.17' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_27690: mannitol dehydrogenase
is similar to:
PaperBLAST

A0A0U4Y4V3: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) from Corynebacterium glutamicum

24% id,
92% cov

MTLD_ALTAL / Q6UQ76: Mannitol-1-phosphate 5-dehydrogenase; M1PDH; MPD; MPDH; EC 1.1.1.17 from Alternaria alternata

24% id,
80% cov

MTLD_PHANO / Q0U6E8: Mannitol-1-phosphate 5-dehydrogenase; M1PDH; MPD; MPDH; EC 1.1.1.17 from Phaeosphaeria nodorum

24% id,
79% cov

More...

AO356_28535: mannitol dehydrogenase
is similar to:
PaperBLAST

MTLD_ECOLI / P09424: Mannitol-1-phosphate 5-dehydrogenase; EC 1.1.1.17 from Escherichia coli
MtlD / b3600: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) from Escherichia coli
mtlD / P09424: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) from Escherichia coli
P09424: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) from Escherichia coli

27% id,
71% cov

I3E3X0: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) from Bacillus methanolicus

24% id,
52% cov

AO356_20805: HAD family hydrolase
is similar to:
PaperBLAST

D0C7J2: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17); mannitol-1-phosphatase (EC 3.1.3.22) from Acinetobacter baumannii

29% id,
32% cov

Q6FBP5: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17); mannitol-1-phosphatase (EC 3.1.3.22) from Acinetobacter baylyi

28% id,
27% cov

AO356_22695: glycerol-3-phosphatase
is similar to:
PaperBLAST

Q6FBP5: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17); mannitol-1-phosphatase (EC 3.1.3.22) from Acinetobacter baylyi

30% id,
25% cov

D0C7J2: mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17); mannitol-1-phosphatase (EC 3.1.3.22) from Acinetobacter baumannii

27% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory