Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.255' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_20305: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

49% id,
94% cov

AO356_05920: S-(hydroxymethyl)glutathione dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

27% id,
86% cov

AO356_28545: alcohol dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

29% id,
76% cov

AO356_00820: alcohol dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

32% id,
65% cov

AO356_28615: NADPH:quinone oxidoreductase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

34% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory