Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.58' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_28535: mannitol dehydrogenase
is similar to:
PaperBLAST

UxaB / b1521: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli
uxaB / P0A6L7: tagaturonate reductase (EC 1.1.1.58) from Escherichia coli

28% id,
79% cov

CA265_RS19880: Altronate oxidoreductase (EC 1.1.1.58) from Pedobacter sp.

24% id,
78% cov

A9QSF6: tagaturonate reductase (EC 1.1.1.58) from Lactococcus lactis

27% id,
65% cov

AO356_27690: mannitol dehydrogenase
is similar to:
PaperBLAST

CA265_RS19880: Altronate oxidoreductase (EC 1.1.1.58) from Pedobacter sp.

22% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory