Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 13 curated entries in PaperBLAST's database that match '1.1.2.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_10305: FAD-linked oxidase
is similar to:
PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

35% id,
87% cov

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

34% id,
88% cov

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

33% id,
90% cov

More...

AO356_24000: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

36% id,
84% cov

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

30% id,
95% cov

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

33% id,
85% cov

More...

AO356_01090: glycolate oxidase subunit GlcD
is similar to:
PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

29% id,
91% cov

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

30% id,
86% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

30% id,
87% cov

More...

AO356_07570: 4Fe-4S ferredoxin
is similar to:
PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

27% id,
69% cov

LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens
LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens
Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens

30% id,
53% cov

AO356_01095: glycolate oxidase
is similar to:
PaperBLAST

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

27% id,
34% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

33% id,
24% cov

DLD1_YEAST / P32891: D-lactate dehydrogenase [cytochrome] 1, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.2.4 from Saccharomyces cerevisiae
DLD1 / P32891: D-lactate dehydrogenase (EC 1.1.2.4) from Saccharomyces cerevisiae

29% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory