Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 26 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_22845: 4-hydroxyphenylpyruvate dioxygenase is similar to:	PaperBLAST
AO356_22845: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens	100% id, 100% cov
Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens	99% id, 100% cov
P80064: 4-hydroxyphenylpyruvate dioxygenase subunit (EC 1.13.11.27) from Pseudomonas sp. P80064: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens	97% id, 100% cov
AO353_26925: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens	97% id, 100% cov
PfGW456L13_2935: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens	96% id, 100% cov
Ac3H11_1849: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Acidovorax sp.	75% id, 93% cov
Psest_3514: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas stutzeri	54% id, 97% cov
LLY_LEGPC / P69053: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; Legiolysin; EC 1.13.11.27 from Legionella pneumophila	51% id, 98% cov
Q09PG8: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from uncultured soil	52% id, 95% cov
SO1962: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis Q8EFK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis	43% id, 99% cov
Q6KZ98: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Picrophilus torridus	34% id, 89% cov
HPPD1_ASPFU / Q4WHU1: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; L-tyrosine degradation gene cluster protein hppD; Pyomelanin biosynthesis cluster protein hppD; EC 1.13.11.27 from Aspergillus fumigatus	33% id, 89% cov
HPPD_STRAW / Q53586: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Streptomyces avermitilis	37% id, 77% cov
hppD / Q55810: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Synechocystis sp.	31% id, 90% cov
HPPD_CAEEL / Q22633: 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Caenorhabditis elegans	31% id, 87% cov
HPPD_RAT / P32755: 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; F Alloantigen; F protein; EC 1.13.11.27 from Rattus norvegicus P32755: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Rattus norvegicus	29% id, 87% cov
HPPD_HUMAN / P32754: 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Homo sapiens HPD / P32754: 4-hydroxyphenylpyruvate dioxygenase subunit (EC 1.13.11.27) from Homo sapiens P32754: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Homo sapiens	28% id, 88% cov
HPPD_PIG / Q02110: 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Sus scrofa	34% id, 53% cov
More...

AO356_15580: 4-hydroxyphenylpyruvate dioxygenase is similar to:	PaperBLAST
AO353_26925: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens	35% id, 91% cov
Q6KZ98: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Picrophilus torridus	29% id, 95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory