Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 3 curated entries in PaperBLAST's database that match '1.3.8.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_26355: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

42% id,
98% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

41% id,
90% cov

AO356_26365: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

40% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

39% id,
91% cov

AO356_01580: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

41% id,
97% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

38% id,
91% cov

AO356_17045: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

39% id,
98% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

41% id,
90% cov

AO356_10850: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

32% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

29% id,
91% cov

AO356_02925: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

32% id,
96% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

31% id,
88% cov

AO356_09020: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

29% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

27% id,
93% cov

AO356_14190: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

28% id,
98% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

27% id,
92% cov

AO356_27185: hypothetical protein
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

28% id,
92% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

24% id,
93% cov

AO356_01555: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

29% id,
86% cov

AO356_14185: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

29% id,
85% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

27% id,
78% cov

AO356_14165: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

29% id,
76% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

26% id,
81% cov

AO356_15445: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

25% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory