Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 19 curated entries in PaperBLAST's database that match '1.3.8.5' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_26355: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

100% id,
100% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

99% id,
100% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

95% id,
100% cov

More...

AO356_26365: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

95% id,
100% cov

PfGW456L13_2985: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

93% id,
100% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

93% id,
99% cov

More...

AO356_01580: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum

63% id,
93% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

38% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

38% id,
99% cov

More...

AO356_17045: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

39% id,
97% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

37% id,
100% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

37% id,
100% cov

More...

AO356_02925: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

35% id,
99% cov

Pf1N1B4_4787: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

35% id,
99% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

35% id,
99% cov

More...

AO356_10850: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

35% id,
99% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

35% id,
98% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

35% id,
99% cov

More...

AO356_01555: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

32% id,
98% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

31% id,
98% cov

Psest_2445: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

32% id,
94% cov

More...

AO356_27185: hypothetical protein
is similar to:
PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

29% id,
99% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

29% id,
99% cov

Pf1N1B4_4787: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

29% id,
98% cov

More...

AO356_14185: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

31% id,
92% cov

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

29% id,
97% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

31% id,
91% cov

More...

AO356_14190: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

29% id,
98% cov

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

28% id,
96% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

29% id,
93% cov

More...

AO356_09020: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

30% id,
93% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

30% id,
93% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

30% id,
93% cov

More...

AO356_20030: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

30% id,
96% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

28% id,
99% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

28% id,
98% cov

More...

AO356_14165: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

30% id,
92% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

30% id,
90% cov

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

28% id,
96% cov

More...

AO356_10260: SfnB family sulfur acquisition oxidoreductase
is similar to:
PaperBLAST

Pf1N1B4_4787: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

25% id,
96% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

25% id,
96% cov

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

25% id,
96% cov

More...

AO356_15445: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Pf1N1B4_4787: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

26% id,
81% cov

AO353_25680: 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) from Pseudomonas fluorescens

26% id,
81% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

25% id,
81% cov

More...

AO356_10255: SfnB family sulfur acquisition oxidoreductase
is similar to:
PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

23% id,
91% cov

AO356_29315: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACDSB_HUMAN / P45954: Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial; SBCAD; 2-methyl branched chain acyl-CoA dehydrogenase; 2-MEBCAD; 2-methylbutyryl-coenzyme A dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; EC 1.3.8.5 from Homo sapiens
ACADSB / P45954: Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial (EC 1.3.8.5) from Homo sapiens

23% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory