Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 1 curated entries in PaperBLAST's database that match '1.3.99.10' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_01580: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

64% id,
87% cov

AO356_17045: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

37% id,
90% cov

AO356_26355: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

37% id,
88% cov

AO356_26365: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

36% id,
83% cov

AO356_10850: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

34% id,
88% cov

AO356_02925: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

32% id,
86% cov

AO356_09020: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

27% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory