Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_15895: D-amino acid oxidase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

30% id,
95% cov

A0PFJ3: D-amino-acid oxidase (EC 1.4.3.3) from Zea mays

31% id,
53% cov

A0A077JN67: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

28% id,
56% cov

More...

AO356_23145: hydrogen cyanide synthase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

28% id,
89% cov

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

36% id,
13% cov

AO356_01665: FAD-binding oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

24% id,
99% cov

AO356_13975: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

23% id,
98% cov

AO356_26780: D-amino acid oxidase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

26% id,
83% cov

AO356_08505: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

22% id,
93% cov

AO356_24955: D-amino acid oxidase
is similar to:
PaperBLAST

A0PFJ3: D-amino-acid oxidase (EC 1.4.3.3) from Zea mays

29% id,
54% cov

AO356_16865: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

30% id,
44% cov

AO356_12620: amino acid dehydrogenase
is similar to:
PaperBLAST

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

44% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory