Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 13 curated entries in PaperBLAST's database that match '2.1.2.10' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_18160: glycine cleavage system protein T
is similar to:
PaperBLAST

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

97% id,
100% cov

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

93% id,
100% cov

PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae

87% id,
100% cov

More...

AO356_13035: glycine cleavage system protein T
is similar to:
PaperBLAST

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

54% id,
100% cov

BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis

54% id,
100% cov

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

38% id,
96% cov

More...

AO356_30050: aminomethyltransferase
is similar to:
PaperBLAST

BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis

30% id,
98% cov

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

28% id,
91% cov

GCST_HUMAN / P48728: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens
AMT / P48728: aminomethyltransferase (EC 2.1.2.10) from Homo sapiens

26% id,
92% cov

More...

AO356_30035: aminomethyltransferase
is similar to:
PaperBLAST

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

30% id,
96% cov

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

28% id,
94% cov

PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae

28% id,
94% cov

More...

AO356_30115: aminomethyltransferase
is similar to:
PaperBLAST

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

27% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory