Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 3 curated entries in PaperBLAST's database that match '2.1.3.9' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_18275: ornithine carbamoyltransferase
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

30% id,
99% cov

AO356_05275: ornithine carbamoyltransferase
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

30% id,
99% cov

AO356_13450: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

35% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory