Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 33 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_20870: 2-methylcitrate synthase
is similar to:
PaperBLAST

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

100% id,
100% cov

Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa

87% id,
100% cov

PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis
SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis

74% id,
100% cov

More...

AO356_19670: type II citrate synthase
is similar to:
PaperBLAST

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

33% id,
99% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

34% id,
93% cov

PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum
Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum

32% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory