Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 15 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_05060: gluconokinase
is similar to:
PaperBLAST

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

45% id,
93% cov

GCNK_GLUOX / Q5FQ97: Gluconokinase; Gluconate kinase; EC 2.7.1.12 from Gluconobacter oxydans

48% id,
83% cov

BPHYT_RS16720: Gluconokinase (EC 2.7.1.12) from Burkholderia phytofirmans

40% id,
92% cov

More...

AO356_09390: shikimate kinase
is similar to:
PaperBLAST

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

29% id,
88% cov

BPHYT_RS16720: Gluconokinase (EC 2.7.1.12) from Burkholderia phytofirmans

26% id,
97% cov

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

29% id,
61% cov

More...

AO356_25635: C4-dicarboxylate ABC transporter permease
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

29% id,
38% cov

AO356_21955: transcriptional regulator
is similar to:
PaperBLAST

GCNK_GLUOX / Q5FQ97: Gluconokinase; Gluconate kinase; EC 2.7.1.12 from Gluconobacter oxydans

46% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory