Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 101 curated entries in PaperBLAST's database that match '2.7.1.13'.

These curated entries have 72 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_24685: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

78% id,
96% cov

AO356_20075: tetraacyldisaccharide 4'-kinase
is similar to:
PaperBLAST

LPXK_ECOLI / P27300: Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; EC 2.7.1.130 from Escherichia coli
YcaH / b0915: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
lpxK / P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli

46% id,
97% cov

O67572: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Aquifex aeolicus

30% id,
90% cov

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC 2.7.1.130 from Arabidopsis thaliana

32% id,
47% cov

AO356_23160: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

28% id,
95% cov

AO356_00035: sugar kinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

27% id,
91% cov

AO356_19260: sodium transporter
is similar to:
PaperBLAST

O35940: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Mus musculus

27% id,
88% cov

AO356_00950: ribokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

26% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory