Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_00950: ribokinase
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

100% id,
100% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

85% id,
100% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

81% id,
100% cov

More...

AO356_00445: ketodeoxygluconokinase
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

28% id,
94% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

34% id,
25% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

35% id,
25% cov

More...

AO356_28555: ketodeoxygluconokinase
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
97% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

26% id,
97% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

25% id,
87% cov

More...

AO356_24685: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

26% id,
100% cov

RBSK_LEIMA / E9AD19: Ribokinase; RK; EC 2.7.1.15 from Leishmania major

27% id,
88% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

26% id,
90% cov

More...

AO356_08850: heptose 1-phosphate adenyltransferase
is similar to:
PaperBLAST

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

27% id,
92% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

24% id,
88% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

32% id,
46% cov

More...

AO356_07330: 1-phosphofructokinase
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

26% id,
93% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

28% id,
85% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

26% id,
85% cov

AO356_23160: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

23% id,
76% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

29% id,
43% cov

AO356_10325: ribose 5-phosphate isomerase
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

34% id,
42% cov

AO356_23520: fructoselysine kinase
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

39% id,
30% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

34% id,
29% cov

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

37% id,
24% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory