Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 25 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_27695: xylulose kinase
is similar to:

AO356_27695: Xylulose kinase (EC from Pseudomonas fluorescens

100% id,
100% cov

Pf6N2E2_805: Xylulose kinase (EC from Pseudomonas fluorescens

96% id,
100% cov

XYLB_ECOLI / P09099: Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC; EC 2.7.1.- from Escherichia coli
XylB / b3564: xylulokinase (EC from Escherichia coli
xylB / GB|AAC76588.1: xylulokinase; EC from Escherichia coli
xylB / P09099: xylulokinase (EC from Escherichia coli

35% id,
98% cov


AO356_18250: glycerol kinase
is similar to:

XYLB_LEVBR / P35850: Xylulose kinase; Xylulokinase; EC from Levilactobacillus brevis

24% id,
97% cov

PGA1_c14010: Xylulose kinase (EC from Phaeobacter inhibens

23% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory