Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 46 curated entries in PaperBLAST's database that match '2.7.1.4' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_00035: sugar kinase
is similar to:
PaperBLAST

AO356_00035: Fructokinase (EC 2.7.1.4) from Pseudomonas fluorescens

100% id,
100% cov

Pf6N2E2_1965: Fructokinase (EC 2.7.1.4) from Pseudomonas fluorescens

100% id,
99% cov

BPHYT_RS02045: Fructokinase (EC 2.7.1.4) from Burkholderia phytofirmans

50% id,
97% cov

More...

AO356_27700: fructokinase
is similar to:
PaperBLAST

AO353_25910: Fructokinase (EC 2.7.1.4) from Pseudomonas fluorescens

84% id,
99% cov

PfGW456L13_3036: Fructokinase (EC 2.7.1.4) from Pseudomonas fluorescens

81% id,
99% cov

Dshi_2797: Fructokinase (EC 2.7.1.4) from Dinoroseobacter shibae

37% id,
99% cov

More...

AO356_24685: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

SCRK1_ORYSI / A2WXV8: Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa

31% id,
98% cov

SCRK1_ORYSJ / Q0JGZ6: Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa

31% id,
98% cov

SCRK1_MAIZE / Q6XZ79: Fructokinase-1; ZmFRK1; EC 2.7.1.4 from Zea mays

31% id,
98% cov

More...

AO356_23520: fructoselysine kinase
is similar to:
PaperBLAST

SCRK_KLEPN / P26420: Fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae
scrK / GB|CAA43322.1: fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae
scrK / P26420: fructokinase (EC 2.7.1.4) from Klebsiella pneumoniae

32% id,
91% cov

scrK / GB|AAA08602.1: fructokinase; EC 2.7.1.4 from Salmonella enterica

30% id,
85% cov

BPHYT_RS02045: Fructokinase (EC 2.7.1.4) from Burkholderia phytofirmans

26% id,
94% cov

More...

AO356_00950: ribokinase
is similar to:
PaperBLAST

SCRK_KLEPN / P26420: Fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae
scrK / GB|CAA43322.1: fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae
scrK / P26420: fructokinase (EC 2.7.1.4) from Klebsiella pneumoniae

28% id,
99% cov

N515DRAFT_1919: Fructokinase (EC 2.7.1.4) from Dyella japonica

28% id,
98% cov

scrK / GB|AAA08602.1: fructokinase; EC 2.7.1.4 from Salmonella enterica

28% id,
97% cov

More...

AO356_23160: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

Echvi_2804: Fructokinase (EC 2.7.1.4) from Echinicola vietnamensis

23% id,
94% cov

cscK / GB|CAA57218.2: fructokinase; EC 2.7.1.4 from Escherichia coli

34% id,
36% cov

AO356_00445: ketodeoxygluconokinase
is similar to:
PaperBLAST

Q6VWJ5: fructokinase (EC 2.7.1.4) from Solanum lycopersicum

25% id,
69% cov

AO356_28555: ketodeoxygluconokinase
is similar to:
PaperBLAST

C4M2I2: fructokinase (EC 2.7.1.4) from Entamoeba histolytica

25% id,
61% cov

AO356_07330: 1-phosphofructokinase
is similar to:
PaperBLAST

Shewana3_0069: Fructokinase (EC 2.7.1.4) from Shewanella sp.

28% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

92915-94027 (frame -3) on CP012831
is similar to:
PaperBLAST

Q6VWJ5: fructokinase (EC 2.7.1.4) from Solanum lycopersicum
Also see hits to annotated proteins above

25% id,
78% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory