Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 138 curated entries in PaperBLAST's database that match '3.1.3.3'.

These curated entries have 107 distinct sequences.

Running ublast with E ≤ 0.01

Found 23 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_20835: phosphoserine phosphatase
is similar to:
PaperBLAST

THRH_PSEAE / Q9I2Y2: Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa

89% id,
100% cov

THRH_PSESM / Q883R9: Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 from Pseudomonas syringae

91% id,
86% cov

AO356_08735: phosphoserine phosphatase
is similar to:
PaperBLAST

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

49% id,
96% cov

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

46% id,
96% cov

SERB_IDILO / Q5QXU4: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Idiomarina loihiensis

46% id,
95% cov

More...

AO356_10300: 3-phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

53% id,
65% cov

CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.

32% id,
39% cov

AO356_12720: HAD family hydrolase
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

34% id,
83% cov

AO356_09670: fructose 1,6-bisphosphatase
is similar to:
PaperBLAST

P46283: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Arabidopsis thaliana

33% id,
75% cov

A8DUA7: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Morus alba

32% id,
75% cov

A8IRK4: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii

31% id,
77% cov

More...

AO356_10340: phosphoserine phosphatase
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis

32% id,
70% cov

SERB_STRCO / Q9S281: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptomyces coelicolor

26% id,
47% cov

SERB_ECOLI / P0AGB0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Escherichia coli
SerB / b4388: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli
serB: phosphoserine phosphatase; EC 3.1.3.3 from Escherichia coli
serB / P0AGB0: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli

23% id,
48% cov

AO356_19355: HAD family hydrolase
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis

30% id,
71% cov

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

25% id,
79% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

25% id,
74% cov

More...

AO356_19175: alpha-ribazole phosphatase
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

29% id,
73% cov

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

27% id,
77% cov

AO356_20130: HAD family hydrolase
is similar to:
PaperBLAST

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

25% id,
81% cov

AO356_02185: chemotaxis protein CheY
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

28% id,
57% cov

AO356_16925: bifunctional glyoxylate/hydroxypyruvate reductase B
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
50% cov

AO356_24380: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

27% id,
50% cov

AO356_19040: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
45% cov

AO356_26030: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

31% id,
42% cov

AO356_06935: glycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
42% cov

AO356_27845: hydrolase
is similar to:
PaperBLAST

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

43% id,
28% cov

SERB_VIBCH / Q9KPM2: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Vibrio cholerae

28% id,
41% cov

SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes

37% id,
27% cov

More...

AO356_24675: bifunctional glyoxylate/hydroxypyruvate reductase B
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

28% id,
43% cov

AO356_20675: dihydrofolate reductase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

27% id,
40% cov

AO356_26720: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
37% cov

AO356_15740: lantibiotic-modifying protein
is similar to:
PaperBLAST

SERB_YEAST / P42941: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Saccharomyces cerevisiae

28% id,
35% cov

AO356_04410: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

25% id,
28% cov

AO356_09490: poly(3-hydroxyalkanoate) granule-associated protein PhaF
is similar to:
PaperBLAST

SYNJ2_HUMAN / O15056: Synaptojanin-2; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 2; EC 3.1.3.36 from Homo sapiens
SYNJ2 / O15056: synaptojanin 2 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens

25% id,
15% cov

AO356_12295: type VI secretion protein
is similar to:
PaperBLAST

INP5E_HUMAN / Q9NRR6: Phosphatidylinositol polyphosphate 5-phosphatase type IV; 72 kDa inositol polyphosphate 5-phosphatase; Inositol polyphosphate-5-phosphatase E; Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase; EC 3.1.3.36; EC 3.1.3.86 from Homo sapiens
INPP5E / Q9NRR6: type IV inositol polyphosphate 5-phosphatase (EC 3.1.3.36; EC 3.1.3.86) from Homo sapiens
Q9NRR6: phosphoinositide 5-phosphatase (EC 3.1.3.36) from Homo sapiens

35% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 22 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2190026-2191129 (frame -3) on CP012831
is similar to:
PaperBLAST

P46283: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
87% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory