Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 17 curated entries in PaperBLAST's database that match '3.7.1.3' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_21470: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

28% id,
45% cov

AO356_28810: aminotransferase class V
is similar to:
PaperBLAST

AO353_05935: Kynureninase (EC 3.7.1.3) from Pseudomonas fluorescens

23% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory