Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 55 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_08155: arginine decarboxylase
is similar to:
PaperBLAST

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

98% id,
100% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

87% id,
100% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

84% id,
100% cov

More...

AO356_07310: ornithine decarboxylase
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

26% id,
84% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

27% id,
28% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

25% id,
27% cov

AO356_12740: diaminopimelate decarboxylase
is similar to:
PaperBLAST

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

28% id,
50% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

24% id,
51% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

23% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory