Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 15 curated entries in PaperBLAST's database that match '4.1.1.43' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_22985: 2-oxoisovalerate dehydrogenase
is similar to:
PaperBLAST

ppdcβ / G1UHX5: phenylpyruvate decarboxylase β subunit (EC 4.1.1.43) from Streptomyces virginiae

46% id,
95% cov

AO356_24885: pyruvate dehydrogenase
is similar to:
PaperBLAST

ppdcβ / G1UHX5: phenylpyruvate decarboxylase β subunit (EC 4.1.1.43) from Streptomyces virginiae

37% id,
98% cov

AO356_22990: 2-oxoisovalerate dehydrogenase
is similar to:
PaperBLAST

ppdcα / A0A222AKA3: phenylpyruvate decarboxylase α subunit (EC 4.1.1.43) from Streptomyces virginiae
A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

33% id,
94% cov

AO356_16170: acetolactate synthase 3 catalytic subunit
is similar to:
PaperBLAST

pdc / Q5NYJ8: phenylpyruvate decarboxylase (EC 4.1.1.43) from Aromatoleum aromaticum

27% id,
95% cov

AO356_17755: hypothetical protein
is similar to:
PaperBLAST

ARO10_YEAST / Q06408: Transaminated amino acid decarboxylase; Thiamine diphosphate-dependent phenylpyruvate decarboxylase; PPDC; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; Transaminated branched-chain amino acid decarboxylase; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74; EC 4.1.1.80 from Saccharomyces cerevisiae
ARO10 / Q06408: 2-keto-3-methylvalerate decarboxylase subunit (EC 4.1.1.1; EC 4.1.1.74; EC 4.1.1.43; EC 4.1.1.72) from Saccharomyces cerevisiae
Q06408: phenylpyruvate decarboxylase (EC 4.1.1.43) from Saccharomyces cerevisiae

23% id,
92% cov

Q2UKV4: phenylpyruvate decarboxylase (EC 4.1.1.43) from Aspergillus oryzae

27% id,
53% cov

AO356_19620: glyoxylate carboligase
is similar to:
PaperBLAST

PDC1_YEAST / P06169: Pyruvate decarboxylase isozyme 1; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC1 / P06169: pyruvate decarboxylase (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

21% id,
94% cov

PDC6_YEAST / P26263: Pyruvate decarboxylase isozyme 3; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC6 / P26263: pyruvate decarboxylase 3 monomer (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

21% id,
87% cov

AO356_24880: ABC transporter substrate-binding protein
is similar to:
PaperBLAST

ppdcα / A0A222AKA3: phenylpyruvate decarboxylase α subunit (EC 4.1.1.43) from Streptomyces virginiae
A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

35% id,
55% cov

AO356_14990: 1-deoxy-D-xylulose-5-phosphate synthase
is similar to:
PaperBLAST

ppdcα / A0A222AKA3: phenylpyruvate decarboxylase α subunit (EC 4.1.1.43) from Streptomyces virginiae
A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

35% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory