Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 61 curated entries in PaperBLAST's database that match '4.1.2.5'.

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_13955: threonine aldolase
is similar to:
PaperBLAST

AO353_07670: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

94% id,
100% cov

PfGW456L13_1114: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

93% id,
100% cov

Q88R13: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida

85% id,
100% cov

AO356_21260: 6-carboxy-5,6,7,8-tetrahydropterin synthase
is similar to:
PaperBLAST

QUED_ECOLI / P65870: 6-carboxy-5,6,7,8-tetrahydropterin synthase; CPH4 synthase; Queuosine biosynthesis protein QueD; EC 4.1.2.50 from Escherichia coli
SscR / b2765: 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) from Escherichia coli
queD / P65870: 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) from Escherichia coli
P65870: 6-carboxytetrahydropterin synthase (EC 4.1.2.50) from Escherichia coli

75% id,
96% cov

QUED_BACSU / O31676: 6-carboxy-5,6,7,8-tetrahydropterin synthase; CPH4 synthase; Queuosine biosynthesis protein QueD; EC 4.1.2.50 from Bacillus subtilis
queD / O31676: 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) from Bacillus subtilis

32% id,
84% cov

AO356_25560: 2-keto-3-deoxy-L-rhamnonate aldolase
is similar to:
PaperBLAST

HPCH_ECOLX / Q47098: 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; HHED aldolase; 4-hydroxy-2-ketoheptane-1,7-dioate aldolase; HKHD aldolase; EC 4.1.2.52 from Escherichia coli
B1IS70: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52) from Escherichia coli
Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

67% id,
99% cov

RHMA_ECOLI / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase; KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase; 2-keto-3-deoxy acid sugar aldolase; EC 4.1.2.53 from Escherichia coli
YfaU / b2245: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli
yfaU / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli
P76469: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli

59% id,
98% cov

KDSGA_PSEPU / P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase; 2-keto-3,6-dideoxy-6-sulfogluconate aldolase; KDSG aldolase; EC 4.1.2.58 from Pseudomonas putida
P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase (EC 4.1.2.58) from Pseudomonas putida

44% id,
98% cov

AO356_18765: threonine aldolase
is similar to:
PaperBLAST

LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
itaE / GB|BAA20882.1: threonine aldolase; EC 4.1.2.5 from Escherichia coli

58% id,
99% cov

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

46% id,
99% cov

GLY1 / GB|AAA72430.1: threonine aldolase; EC 4.1.2.5 from Saccharomyces cerevisiae

38% id,
86% cov

AO356_26150: 2-dehydro-3-deoxyglucarate aldolase
is similar to:
PaperBLAST

HPCH_ECOLX / Q47098: 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; HHED aldolase; 4-hydroxy-2-ketoheptane-1,7-dioate aldolase; HKHD aldolase; EC 4.1.2.52 from Escherichia coli
B1IS70: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52) from Escherichia coli
Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

53% id,
99% cov

RHMA_ECOLI / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase; KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase; 2-keto-3-deoxy acid sugar aldolase; EC 4.1.2.53 from Escherichia coli
YfaU / b2245: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli
yfaU / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli
P76469: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli

52% id,
94% cov

KDSGA_PSEPU / P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase; 2-keto-3,6-dideoxy-6-sulfogluconate aldolase; KDSG aldolase; EC 4.1.2.58 from Pseudomonas putida
P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase (EC 4.1.2.58) from Pseudomonas putida

37% id,
100% cov

AO356_07855: hypothetical protein
is similar to:
PaperBLAST

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

45% id,
100% cov

LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
itaE / GB|BAA20882.1: threonine aldolase; EC 4.1.2.5 from Escherichia coli

32% id,
99% cov

GLY1 / GB|AAA72430.1: threonine aldolase; EC 4.1.2.5 from Saccharomyces cerevisiae

34% id,
86% cov

AO356_20285: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
is similar to:
PaperBLAST

YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55; EC 4.1.2.21) from Escherichia coli
dgoA / Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55) from Escherichia coli

46% id,
94% cov

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC 4.1.2.55) from Dickeya dadantii

33% id,
75% cov

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli

36% id,
67% cov

AO356_05150: keto-deoxy-phosphogluconate aldolase
is similar to:
PaperBLAST

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli

45% id,
94% cov

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC 4.1.2.55) from Dickeya dadantii

44% id,
94% cov

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16; EC 4.1.2.55) from Thermotoga maritima

29% id,
99% cov

AO356_04530: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli
YagE / b0268: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli
yagE / P75682: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli

30% id,
97% cov

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus
Q6KZI8: 2-dehydro-3-deoxy-D-gluconate aldolase (EC 4.1.2.51) from Picrophilus torridus

28% id,
87% cov

AO356_06755: dihydrodipicolinate synthase
is similar to:
PaperBLAST

YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli
YagE / b0268: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli
yagE / P75682: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli

29% id,
96% cov

KDGA_THETE / Q704D1: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; KD(P)G aldolase; EC 4.1.2.14; EC 4.1.2.51 from Thermoproteus tenax

29% id,
91% cov

AO356_07185: 5-dehydro-4-deoxyglucarate dehydratase
is similar to:
PaperBLAST

YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli
YagE / b0268: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli
yagE / P75682: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli

26% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory