Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_22080: isocitrate lyase is similar to:	PaperBLAST
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	99% id, 100% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	79% id, 99% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	79% id, 98% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	79% id, 96% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	72% id, 100% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	72% id, 100% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	71% id, 98% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	64% id, 96% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	62% id, 97% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	62% id, 97% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	59% id, 97% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	58% id, 96% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	57% id, 43% cov
ACEA_HYPME / O50078: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum	26% id, 92% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	38% id, 62% cov
Q9P8Q7: isocitrate lyase (EC 4.1.3.1) from Candida albicans	34% id, 60% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	35% id, 57% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	36% id, 56% cov
ACEA_BRANA / P25248: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus	35% id, 55% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	34% id, 56% cov
Psest_2014: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri	28% id, 64% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	35% id, 50% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	36% id, 48% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	38% id, 44% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	37% id, 46% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	35% id, 48% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	35% id, 47% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	33% id, 51% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	36% id, 47% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	36% id, 46% cov
Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa	29% id, 49% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	34% id, 42% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	44% id, 32% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	38% id, 36% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	43% id, 30% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	32% id, 40% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	41% id, 31% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	32% id, 39% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	36% id, 35% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	39% id, 32% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	37% id, 33% cov
A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii	33% id, 37% cov
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	45% id, 25% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	36% id, 32% cov
A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii	27% id, 40% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	37% id, 23% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	30% id, 23% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	29% id, 23% cov
Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa	39% id, 12% cov
More...

AO356_20865: 2-methylisocitrate lyase is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	34% id, 90% cov
ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii	34% id, 54% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	35% id, 43% cov

AO356_01550: oxaloacetate decarboxylase is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	29% id, 82% cov
ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii	27% id, 85% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	27% id, 51% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	23% id, 53% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	34% id, 24% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	33% id, 24% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	33% id, 22% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	36% id, 19% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory