Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 13 curated entries in PaperBLAST's database that match '4.2.1.18' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_01590: gamma-carboxygeranoyl-CoA hydratase
is similar to:
PaperBLAST

AO356_01590: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas fluorescens

100% id,
100% cov

Pf6N2E2_2193: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas fluorescens

99% id,
100% cov

liuC / Q88FM3: 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas putida

75% id,
100% cov

More...

AO356_30295: fatty-acid oxidation protein subunit alpha
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

36% id,
100% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

35% id,
95% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

38% id,
72% cov

More...

AO356_26360: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

33% id,
98% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

32% id,
92% cov

F4JML5: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Arabidopsis thaliana

36% id,
79% cov

More...

AO356_30355: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

31% id,
100% cov

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

30% id,
99% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

34% id,
82% cov

More...

AO356_25890: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

30% id,
98% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

30% id,
94% cov

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

27% id,
96% cov

More...

AO356_20400: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

40% id,
73% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

34% id,
64% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

31% id,
59% cov

More...

AO356_27920: p-hydroxycinnamoyl CoA hydratase/lyase
is similar to:
PaperBLAST

Pf6N2E2_2193: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas fluorescens

32% id,
90% cov

AO356_01590: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas fluorescens

32% id,
90% cov

SM_b21126: 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Sinorhizobium meliloti

29% id,
97% cov

More...

AO356_26370: crotonase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

29% id,
95% cov

AO356_01590: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas fluorescens

26% id,
97% cov

Pf6N2E2_2193: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pseudomonas fluorescens

26% id,
81% cov

More...

AO356_26645: crotonase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

31% id,
91% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

35% id,
77% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

34% id,
78% cov

More...

AO356_17825: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

28% id,
94% cov

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

27% id,
98% cov

AO356_02330: multifunctional fatty acid oxidation complex subunit alpha
is similar to:
PaperBLAST

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

35% id,
75% cov

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

37% id,
70% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

38% id,
67% cov

More...

AO356_24105: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

48% id,
51% cov

AO356_04640: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

28% id,
88% cov

AO356_01570: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

49% id,
49% cov

AO356_30360: 3-hydroxypropionyl-CoA dehydratase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

32% id,
70% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

27% id,
73% cov

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

26% id,
76% cov

More...

AO356_12440: epimerase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

25% id,
84% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

24% id,
79% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

28% id,
69% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

503525-505738 (frame -3) on CP012831
is similar to:
PaperBLAST

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus
Also see hits to annotated proteins above

34% id,
79% cov

AUHM_HUMAN / Q13825: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding protein/enoyl-CoA hydratase; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Homo sapiens
AUH / Q13825: methylglutaconyl-CoA hydratase subunit (EC 4.2.1.18) from Homo sapiens
Q13825: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Homo sapiens
Also see hits to annotated proteins above

33% id,
75% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory