Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 9 curated entries in PaperBLAST's database that match '4.2.1.40' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_01240: glucarate dehydratase
is similar to:
PaperBLAST

GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida
gudD / P42206: D-glucarate dehydratase subunit (EC 4.2.1.40) from Pseudomonas putida

82% id,
97% cov

GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
YgcX / b2787: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli
gudD / RF|NP_417267: glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
gudD / P0AES2: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli

76% id,
99% cov

GUDD_ACIAD / Q6FFQ2: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi
gudD / Q6FFQ2: D-glucarate dehydratase subunit (EC 4.2.1.40) from Acinetobacter baylyi
Q6FFQ2: glucarate dehydratase (EC 4.2.1.40) from Acinetobacter baylyi

68% id,
100% cov

AO356_25015: glucarate dehydratase
is similar to:
PaperBLAST

GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
YgcX / b2787: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli
gudD / RF|NP_417267: glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
gudD / P0AES2: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli

35% id,
96% cov

GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida
gudD / P42206: D-glucarate dehydratase subunit (EC 4.2.1.40) from Pseudomonas putida

36% id,
94% cov

GUDD_ACIAD / Q6FFQ2: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi
gudD / Q6FFQ2: D-glucarate dehydratase subunit (EC 4.2.1.40) from Acinetobacter baylyi
Q6FFQ2: glucarate dehydratase (EC 4.2.1.40) from Acinetobacter baylyi

34% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory