Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_07170: galactarate dehydratase
is similar to:
PaperBLAST

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

95% id,
100% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

66% id,
99% cov

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

62% id,
99% cov

AO356_27460: galactonate dehydratase
is similar to:
PaperBLAST

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

38% id,
99% cov

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

36% id,
100% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

36% id,
95% cov

AO356_24195: galactonate dehydratase
is similar to:
PaperBLAST

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

39% id,
95% cov

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

38% id,
96% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

36% id,
94% cov

AO356_26155: rhamnonate dehydratase
is similar to:
PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

28% id,
87% cov

AO356_20290: galactonate dehydratase
is similar to:
PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

28% id,
74% cov

AO356_28550: bifunctional D-altronate/D-mannonate dehydratase
is similar to:
PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

29% id,
43% cov

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

24% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory