Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.44' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_23165: myo-inosose-2 dehydratase
is similar to:
PaperBLAST

AO356_23165: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

100% id,
100% cov

Pf6N2E2_513: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

98% id,
100% cov

AO353_21340: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

92% id,
100% cov

More...

AO356_27265: hypothetical protein
is similar to:
PaperBLAST

HSERO_RS12135: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Herbaspirillum seropedicae

23% id,
85% cov

PS417_11855: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas simiae

26% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory