Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_28550: bifunctional D-altronate/D-mannonate dehydratase
is similar to:
PaperBLAST

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

83% id,
100% cov

DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens

83% id,
100% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

80% id,
100% cov

More...

AO356_28530: mannonate dehydratase
is similar to:
PaperBLAST

Q1QT83: mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens

72% id,
99% cov

UXUA_ECOLI / P24215: Mannonate dehydratase; D-mannonate hydro-lyase; EC 4.2.1.8 from Escherichia coli
UxuA / b4322: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
uxuA / P24215: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
P24215: mannonate dehydratase (EC 4.2.1.8) from Escherichia coli

66% id,
99% cov

uxuA / Q9WXS4: D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima

35% id,
64% cov

More...

AO356_20290: galactonate dehydratase
is similar to:
PaperBLAST

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

33% id,
100% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

32% id,
100% cov

MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus

32% id,
100% cov

More...

AO356_26155: rhamnonate dehydratase
is similar to:
PaperBLAST

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

26% id,
92% cov

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

26% id,
88% cov

MAND_ECOMS / D8ADB5: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli

25% id,
89% cov

More...

AO356_06875: mandelate racemase
is similar to:
PaperBLAST

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

37% id,
34% cov

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

26% id,
45% cov

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

33% id,
34% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory